Reproducible Data Management and Analysis using R
Fjukstad, Bjørn; Shvetsov, Nikita; Nøst, Therese Haugdahl; Bøvelstad, Hege Marie; Halbach, Till; Holsbø, Einar; Hansen, Knut; Bongo, Lars Ailo
Chapter
Submitted version
Date
2020Metadata
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Original version
http://dx.doi.org/10.1101/644625Abstract
Standardizing and documenting computational analyses is necessary to ensure reproducible results. We describe an R-based implementation of data management and preprocessing that is well integrated with the analysis tools typically used for statistical analysis of omics data. We have used these tools to organize data storage and documentation, and to standardize the analysis of gene expression data, in the Norwegian Women and Cancer study.